This Python program provides a comprehensive pipeline for processing ANNOVAR files, converting them into AnnData format, and generating UMAP visualizations along with various summary reports based on ...
UMAP will work without it, but if installed it will run faster, particularly on multicore machines. For a problem such as the 784-dimensional MNIST digits dataset with 70000 data samples, UMAP can ...
Background: Acute kidney injury (AKI) is characterized by rapid loss of renal function and is associated with severe clinical outcomes. Understanding the cellular heterogeneity in urine samples during ...
Abstract: Manifold learning is a widely used technique for reducing the dimensionality of complex data to make it more understandable and more efficient to work with. However, current state-of-the-art ...
Single-cell RNA sequencing (scRNA-seq) has become one of the most widely used technologies in basic biology. With the rise of scRNA-seq, the use of UMAP has become ubiquitous in publications. While ...
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