Expensive computation in handling a large number of sequences limits the application of local multiple sequence alignment. We present an Eulerian path approach to local multiple alignment for DNA ...
With the rapid sequencing of many related genomes, comparative sequence analysis has emerged as one of the most important areas of computational biology. The fundamental tool of comparative sequence ...
In this paper, an approach is described that combines multiple structure alignments and multiple sequence alignments to generate sequence profiles for protein families. First, multiple sequence ...
Pairwise alignment class: Using the Needleman-Wunsch and Smith-Waterman algorithms, this project uses two classes to align two sequences of the same biotype (protein, R/DNA): a Substitution Matrix ...
In bioinformatics, multiple sequence alignment (MSA) is an NP-hard problem. Nature-inspired approaches can provide an approximate solution compared to conventional approaches. In this article, the MSA ...
This Perl module enables multiple sequence alignment of any base objects such as symbols, numbers or data structures. It is a considerably modified extension of Algorithm::NeedlemanWunsch pairwise ...
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