GitHub

command-line tools for converting fasta files with population samples into other data formats

The fasta2Strcuture.pl script can convert a fasta file with multiple haplotypes per individual into an integer format accepted by STRUCTURE. The allelic dosage for a site is also calculated and this ...
GitHub

Simple script to reduce DNA sequences (in Fasta format) to K-mer frequencies.

To use FastaToKmerFreq, simply download the file FastaToKmerFreq.py from this repository and run it with Python3. The script requires numpy, which can be obtained via pip: FastaToKmerFreq takes as ...