GitHub

BLAST in Embedding Space

This project develops a novel approach to sequence similarity searching in bioinformatics by implementing a BLAST-like algorithm that operates on sequence embeddings rather than raw sequence data. By ...
GitHub

guzikine/pblast-heuristic-algorithm

This repository holds an heuristic algortihm whose goal is to find the best letter sequence match in a massive sequential letter database. This heuristic algorithm is called BLAST [1], and is used to ...
IEEE

Reducing the Computational Complexity for BLAST by Using a Novel Fast Algorithm to Compute an Initial Square-Root Matrix

Abstract: We propose a fast algorithm to compute an initial triangular square-root of the estimation error covariance matrix for BLAST, which are then applied to ...
IEEE

Design of a FPGA-Based Parallel Architecture for BLAST Algorithm with Multi-hits Detection

Abstract: In this paper, a design of a Field Programmable Gate Array (FPGA)-based parallel architecture for Basic Local Alignment Search Tool (BLAST) Algorithm with multi-hits Detection is proposed.
Scientific Research Publishing

Z.W. Catherine, H. Sweatman, J.S. Thompson, B. Mulgrew, and P.M. Grant, "Comparison of Detection Algorithm including BLAST for Wireless Communication using Multiple Antennas ...

ABSTRACT: In this paper, the iterative Vertical-Bell-lab Layered Space-Time (V-BLAST) decoding algorithm of an Adaptive Modulation and Coding (AMC) system is proposed, and the corresponding MIMO ...